miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|51518377|gb|CV055275.1|CV055275 GGCGGCGTAGGCCTGTACTTGGTGCAGCTTGCAAAGCTAGCGAACCTTCATGTTACCGCCACCTGCGGCGCCCGCAACAT
GGATCTTGTGAAGAGCTTGGGCGCGGATGAGGTGATGGACTACAAGACCCCAGAGGGGACGAGCCTGCAGAGCCCCTCCG
GCAGGAAGTACGACGGCGTGGTTCACTGCACCGTCGGTGTCAGCTGGTCGTCTTTCCAGCCATTGCTGACTGACGCCGGG
AGAGTTATCGACATCACCCCCAATTTCTCGGCCATCCTCACATCTGCGCTGCACTGGGTGACGTTCTCCAAGAAGCGCCT
CGTGCCCCTGCTCCTGTCGCCCAACAAGGCGGACCTGGAGTTCTTGGTCGGGCTGCTCAAGGAAGGCAAGCTGAAGACGG
TGATCGACTCGAGGTTCCCCTTGAGCGACGCAGGCAAGGCGTGGCAAAGCAGTATCGATGGCCATGCCACTGGTAAGATT
GTTGTTGAGATGGAGAGCTGATTGTCGTCGATGCTTATATAGTACTCCCTCCGTCCCGGAAATANCTNGNTCTAAGAAAT
GTTTTGGTTCTAAGAAAATGGTACAAAAATGGGNNACGTATCTTNCCATTAAACTAAAAAATTAAAAATCTTAGGATTAC
CATTCNTAATTTTTCTTAAGGAACAAAAGGTATTTTTATTGGAAACCAGGAAGGGGGAAGGTATTTTAACCAAAAAAAGG
GGAACCTTGGGCCATTTACCAAGAACCAGAGTGGGGAAG




Most similar to sp|Q9SV68|QORH_ARATH

>>sp|Q9D787|PPIL2_MOUSE Peptidyl-prolyl cis-trans isomerase-like 2
           OS=Mus musculus GN=Ppil2 PE=2 SV=2
          Length = 521

 Score = 98.2 bits (243), Expect(2) = 8e-21
 Identities = 56/105 (53%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
 Frame = +2

Query: 107 GRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAK 286
           G + +EL  D TP T ENF  LC          K  ++ G+IFHR I  F+ QGGD T  
Sbjct: 289 GDLNLELHCDLTPKTCENFIKLC----------KKQYYDGTIFHRSIRNFVIQGGDPTG- 337

Query: 287 NGTGGESIYGAKFKDENFIK-KHTGAGILSMANSGPNTNGSQFFI 418
            GTGGES +G  FKDE      HTG G+LSMANSGPNTN SQFFI
Sbjct: 338 TGTGGESFWGKPFKDEFRPNLSHTGRGVLSMANSGPNTNKSQFFI 382



 Score = 21.9 bits (45), Expect(2) = 8e-21
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 441 LDGKHVVFGQVV 476
           LD KH +FG+VV
Sbjct: 390 LDKKHTIFGRVV 401


>sp|P28517|CYPR_CALVI Peptidyl-prolyl cis-trans isomerase,
           rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA
           PE=2 SV=1
          Length = 234

 Score = 97.1 bits (240), Expect(2) = 8e-21
 Identities = 51/125 (40%), Positives = 68/125 (54%)
 Frame = +2

Query: 68  RVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVI 247
           +++ D+     P+GRI   LF    P T  NFR +C   +G+        + GS FHRVI
Sbjct: 27  KIYMDVKHQKKPLGRIVFGLFGKRAPKTVTNFRHICL--RGINGTT----YVGSEFHRVI 80

Query: 248 PGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTD 427
             F+ QGGD    +GTG  SIYG  F+DE    +H   G L MAN GP+TNG QF++ T 
Sbjct: 81  SRFLIQGGDIVNNDGTGSTSIYGDFFQDEALDVEHLRPGYLGMANRGPDTNGCQFYVTTV 140

Query: 428 KTSWV 442
              W+
Sbjct: 141 AAQWL 145



 Score = 23.1 bits (48), Expect(2) = 8e-21
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 441 LDGKHVVFGQVV 476
           L+GKH VFG+V+
Sbjct: 145 LNGKHTVFGKVI 156


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SV68|QORH_ARATH Putative quinone-oxidoreductase homolog,
           chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2
           SV=1
          Length = 329

 Score =  216 bits (551), Expect = 1e-55
 Identities = 107/159 (67%), Positives = 129/159 (81%)
 Frame = +1

Query: 1   GGVGLYLVQLAKLANLHVTATCGARNMDLVKSLGADEVMDYKTPEGTSLQSPSGRKYDGV 180
           GGVG Y VQLAKLAN HVTATCGARN++ VKSLGADEV+DYKTPEG +L+SPSG+KYD V
Sbjct: 166 GGVGHYAVQLAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAV 225

Query: 181 VHCTVGVSWSSFQPLLTDAGRVIDITPNFSAILTSALHWVTFSKKRLVPLLLSPNKADLE 360
           VHC  G+ +S F+P L++ G+VIDITP  +A+ T A+  +T SKK+LVPLLL P   +LE
Sbjct: 226 VHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLE 285

Query: 361 FLVGLLKEGKLKTVIDSRFPLSDAGKAWQSSIDGHATGK 477
           F+V L+KEGK+KTVIDS+ PLS A  AW  SIDGHATGK
Sbjct: 286 FMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHATGK 324